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TRAPR

TRAPR

A tool for visualization and statistical analysis of RNA-seg data. The TRAPR algorithm can filter low-quality data, normalize, transform, perform statistical analyses, and visualize data. The ability to visualize results supports the creation of customized computing pipelines. It additionally has functions for data management.

Topic

Transcriptomics; RNA-seq; Gene expression

Details

  • Operation: Visualisation; RNA-Seq analysis
  • Input: Tab-deliminated text file
  • Output: -
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X
  • License: GNU GPL v2+
  • Cost: Free
  • Version name: 1.0.1
  • Maturity: Mature
  • Credit: National Research Foundation of Korea (NRF), he Korean Health Technology R&D Project, the Ministry of Health and Welfare, the ICT R&D program of MSIP/IITP, Ministry of Food and Drug Safety
  • Contact: thu365 _at_ snu.ac.kr
  • Collection: -

Publications

Lim JH, Lee SY, Kim JH "TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data." Genomics Inform. 2017 Mar;15(1):51-53. Mar 29. https://doi.org/10.5808/GI.2017.15.1.51
PMID: 28416950
PMCID: PMC5389949


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