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TSSer

TSSer

TSSer is a tool to detect transcription start sites in bacterial RNA-seq data.

Topic

Gene expression; RNA-Seq; Transcription factors and regulatory sites

Details

  • Operation: Promoter prediction
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: -
  • Contact: Jorjani H hadi.jorjani _at_ unibas.ch | Zavolan M mihaela.zavolan _at_ unibas.ch
  • Collection: -

Publications

Jorjani H, Zavolan M "TSSer: an automated method to identify transcription start sites in prokaryotic genomes from differential RNA sequencing data." Bioinformatics 2014; 30(7):971-4 https://doi.org/10.1093/bioinformatics/btt752
PMID: 24371151


Download and documentation

Currently not available or not maintained.








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