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TruHmm

TruHmm

TruHmm is a tool for assembling prokaryote RNA-seq transcriptomes based on a reference.

Topic

Transcriptome; RNA; Assembly; RNA-seq; RNA-seq; Transcription

Details

  • Operation: Sequence assembly
  • Software interface: Command-line user interface
  • Language: C++;Perl
  • Operating system: Linux; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: The National Science Foundation (NSF), UNC Charlotte.
  • Contact: Shan Li sli13 _at_ uncc.edu | Xia Dong xdong4 _at_ uncc.edu | Zhengchang Su zcsu _at_ uncc.edu
  • Collection: -

Publications

Li S, Dong X, Su Z "Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling." BMC Genomics. 2013 Jul 30;14:520. https://doi.org/10.1186/1471-2164-14-520
PMID: 23899370
PMCID: PMC3734233


Download and documentation

Currently not available or not maintained.








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