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VISION

VISION

VISION is a tool that describes coordinated variation among cells in single-cell RNA-seq (scRNA-seq) data. The VISION tool computes an interactive, low latency and feature-rich HTML report.

Topic

RNA-seq; Gene expression; Transcriptomics

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: The MIT License
  • Cost: Free
  • Version name: 2.0.0
  • Credit: NIH-NIAID, Chan-Zuckerberg Initiative, Chan Zuckerberg Biohub investigator program.
  • Contact: Nir Yosef niryosef _at_ berkeley.edu
  • Collection: -

Publications

DeTomaso D, Jones MG, Subramaniam M, Ashuach T, Ye CJ, Yosef N "Functional interpretation of single cell similarity maps." Nat Commun. 2019 Sep 26;10(1):4376. https://doi.org/10.1038/s41467-019-12235-0
PMID: 31558714
PMCID: PMC6763499


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