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WaveQTL

WaveQTL

WaveQTL is a tool for the analysis of functional phenotypes in RNA-seq, ChIP-seq, and DNase-seq data. The WaveQTL algorithm uses wavelet-based techniques for the analyses and tests for the association among genetic variants and the underlying function.

Topic

ChIP-seq; RNA-seq; Mapping

Details

  • Operation: Genetic mapping
  • Software interface: Command-line user interface
  • Language: R;C++
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 2.2
  • Maturity: Stable
  • Credit: The National Institutes of Health (NIH).
  • Contact: Heejung Shim hjshim _at_ gmail.com | Matthew Stephens mstephens _at_ uchicago.edu
  • Collection: -

Publications

Shim H, Stephens M "WAVELET-BASED GENETIC ASSOCIATION ANALYSIS OF FUNCTIONAL PHENOTYPES ARISING FROM HIGH-THROUGHPUT SEQUENCING ASSAYS." Ann Appl Stat 2015; 9(2):655-686 https://doi.org/10.1214/14-AOAS776
PMID: 29399242
PMCID: PMC5795621


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