WebGIVI

WebGIVI is a web-based tool for gene enrichment and visualization to obtain gene symbols and iTerm pairs. It uses Cytoscape or Concept Map.

Topic

Genetics; Data visualisation; Transcriptomics

Details

Operation: Enrichment analysis; Expression data visualisation
Software interface: Web user interface
Language: HTML; CSS; JavaScript; PHP
Operating system: Linux; Mac OS X; Microsoft Windows
License: BSD License

Cost

Version name: -

Maturity:

Credit: U.S. National Science Foundation (NSF).
Contact: Liang Sun sunliang _at_ udel.edu
Collection: -

Publications

Sun L, Zhu Y, Mahmood ASMA, Tudor CO, Ren J, Vijay-Shanker K, Chen J, Schmidt CJ "WebGIVI: a web-based gene enrichment analysis and visualization tool." BMC Bioinformatics. 2017 May 4;18(1):237. https://doi.org/10.1186/s12859-017-1664-2
PMID: 28472919
PMCID: PMC5418709

Download and documentation

Source: https://github.com/sunliang3361/WebGIVI
Documentation: http://raven.anr.udel.edu/webgivi/tutori
al.php
Home page: http://raven.anr.udel.edu/webgivi/

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