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WemIQ

WemIQ

WemIQ is a tool for quantification of isoform expression and exon splicing ratios in RNA-seq data. The WemIQ algorithm uses the expectation-maximization (EM) approach and a Poisson model.

Topic

RNA-Seq; Gene transcripts; RNA splicing

Details

  • Operation: RNA-Seq analysis
  • Input: FASTQ
  • Output: -
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: The National Institutes of Health (NIH).
  • Contact: Liang Chen liangche _at_ usc.edu
  • Collection: -

Publications

Zhang J, Kuo CC, Chen L "WemIQ: an accurate and robust isoform quantification method for RNA-seq data." Bioinformatics. 2015 Mar 15;31(6):878-85. Epub 2014 Nov 17. https://doi.org/10.1093/bioinformatics/btu757
PMID: 25406327
PMCID: PMC4380033


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