For better experience, turn on JavaScript!


ascend

ascend

ascend (Analysis of Single Cell Expression, Normalisation, and Differential expression) is an R tool for analysis of single-cell RNA-seq data. The ascend tool kit contains functions for data quality control, normalization, reduction of dimensionality, sequence clustering, and differential expression analysis.

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.99.69
  • Maturity: Emerging
  • Credit: The National Health and Medical Research Council
  • Contact: Anne Senabouth a.senabouth _at_ imb.uq.edu.au | Quan Nguygen quan.nguyen _at_ imb.uq.edu.au
  • Collection: -

Publications

Senabouth A, Lukowski SW, Hernandez JA, Andersen SB, Mei X, Nguyen QH, Powell JE "ascend: R package for analysis of single-cell RNA-seq data." Gigascience. 2019 Aug 1;8(8). pii: 5554286. https://doi.org/10.1093/gigascience/giz087
PMID: 31505654
PMCID: PMC6735844


Download and documentation








If you find errors, please report here.