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cellAlign
Home » Tools » RNA-seq Tools and Software » scRNA-seq » cellAlign

cellAlign

cellAlign is an R tool to compare and quantify cell expression and trajectories among and between cells in single-cell RNA-seq data sets.



cellAlign

cellAlign is an R tool to compare and quantify cell expression and trajectories among and between cells in single-cell RNA-seq data sets.

Topic

Gene expression; Cell biology; Developmental biology

Details

  • Operation: Pathway or network prediction; Differential gene expression analysis; Gene expression profiling
  • Software interface: Command-line user interface; Library
  • Language: R/C++
  • Operating system: Microsoft Windows
  • License: Other
    • Cost: Free for non-commercial use
  • Version name: 0.1.0
    • Maturity: Mature
  • Credit: the Israel Science Foundation (ISF), the Applebaum Foundation.
  • Contact: Shai S Shen-Orr shenorr _at_ technion.ac.il
  • Collection: -

Publications

Alpert A, Moore LS, Dubovik T, Shen-Orr SS "Alignment of single-cell trajectories to compare cellular expression dynamics." Nat Methods. 2018 Apr;15(4):267-270. https://doi.org/10.1038/nmeth.4628
PMID: 29529018


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