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ddSeeker
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ddSeeker

ddSeeker is a tool to process Bio-Rad ddSEQ single-cell RNA-seq (scRNA-seq) data. It does initial processing and computes quality metrics.



ddSeeker

ddSeeker is a tool to process Bio-Rad ddSEQ single-cell RNA-seq (scRNA-seq) data. It does initial processing and computes quality metrics.

Topic

RNA-seq; Quality affairs; Molecular genetics

Details

  • Operation: Read pre-processing; Sequencing quality control
  • Software interface: Command-line user interface
  • Language: Python, R
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: Chiara Biagioni chiara.biagioni _at_ uslcentro.toscana.it | Paola Fassan paola.fassan _at_ unitn.it | Roberto Bertorelli roberto.bertorelli _at_ unitn.it | Veronica De Sanctis veronical.desanctis _at_ unitn.it | Angelo Di Leo angelo.dileo _at_ uslcentro.toscana.it | Ilenia Migliaccio ilenia.migliaccio _at_ uslcentro.toscana.it | Luca Malorni luca.malorni _at_ uslcentro.toscana.it | Matteo Benelli matteo.benelli _at_ uslcentro.toscana.it
  • Collection: -

Publications

Romagnoli D, Boccalini G, Bonechi M, Biagioni C, Fassan P, Bertorelli R, De Sanctis V, Di Leo A, Migliaccio I, Malorni L, Benelli M "ddSeeker: A Tool for Processing Bio-Rad ddSEQ Single Cell RNA-seq Data" BMC Genomics. 2018 Dec 24;19(1):960. https://doi.org/0.1186/s12864-018-5249-x
PMID: 30583719
PMCID: PMC6304778


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