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deGPS

deGPS

deGPS is a tool to analyze differential gene expression in RNA-seq data sets. The deGPS algorithm uses a normalization technique based on generalized Poisson distribution and tests using permutations.

Topic

Sequence analysis; RNA; Genomics

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Gnu GPL v2
  • Cost: Free
  • Version name: 2.0
  • Maturity: Stable
  • Credit: Advancing a Healthier Wisconsin Fund, Louisiana Hope Research Grant provided by Free to Breathe, Women Health Research Program, National Natural Science Foundation of China, Fundamental Research Funds for the Central Universities of China.
  • Contact: Lu Y ylu _at_ mcw.edu | Chu C chuchen.blueblues _at_ gmail.com
  • Collection: -

Publications

Chu C, Fang Z, Hua X, Yang Y, Chen E, Cowley AW Jr, Liang M, Liu P, Lu Y "deGPS is a powerful tool for detecting differential expression in RNA-sequencing studies." BMC Genomics. 2015 Jun 13;16:455. https://doi.org/10.1186/s12864-015-1676-0
PMID: 26070955
PMCID: PMC4465298


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