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dropClust

dropClust

dropClust is a tool to cluster single-cell RNA-seq (scRNA-seq) data. The Locality Sensitive Hashing, an approximate nearest neighbor search technique algorithm uses Locality Sensitive Hashing, which is an approximate nearest neighbor search method.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis; Expression profile clustering
  • Software interface: Command-line user interface
  • Language: R, C++
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 2.1.0
  • Credit: The Department of Science and Technology (DST), Govt. of India, the Department of Biotechnology (DBT), Govt. of India.
  • Contact: Debajyoti Sinha deb.sinha _at_ hotmail.com | debarka _at_ iiitd.ac.in | sanghami _at_ isical.ac.in
  • Collection: -

Publications

Sinha D, Kumar A, Kumar H, Bandyopadhyay S, Sengupta D "dropClust: Efficient Clustering of Ultra-Large scRNA-seq Data " Nucleic Acids Res. 2018 Apr 6;46(6):e36. https://doi.org/10.1093/nar/gky007
PMID: 29361178
PMCID: PMC5888655


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