mmquant

A tool to quantiy gene expression. The mmquant algorithm handles multiply mapping reads, i.e., duplicated genes by constructing merged genes.

Topic

Mapping; RNA-seq

Cost

Maturity:

Zytnicki M "mmquant: how to count multi-mapping reads?" BMC Bioinformatics. 2017 Sep 15;18(1):411. https://doi.org/10.1186/s12859-017-1816-4
PMID: 28915787
PMCID: PMC5603007

Source: https://bitbucket.org/mzytnicki/multi-ma
pping-counter/src/master/
Documentation: https://bitbucket.org/mzytnicki/multi-ma
pping-counter/src/master/README.md
Home page: https://bitbucket.org/mzytnicki/multi-ma
pping-counter

If you find errors, please report here.

SECTIONS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Ads