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rSeqNP
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rSeqNP

rSeqNP is a tool for the non-parametric detection of differential gene expression in RNA-seq datasets. The rSeqNP algorithm uses permutation tests to access statistical significance.



rSeqNP

rSeqNP is a tool for the non-parametric detection of differential gene expression in RNA-seq datasets. The rSeqNP algorithm uses permutation tests to access statistical significance.

Topic

RNA-Seq; Gene expression; RNA; RNA splicing

Details

  • Operation: Splicing model analysis
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Microsoft Windows
  • License: Artistic-2.0
    • Cost: Free
  • Version name: 1.0
  • Credit: National Institutes of Health (NIH), the Alfred A. Taubman Institute, the American Cancer Society, and the Howard Hughes Medical Institute, University of Michigan.
  • Contact: Hui Jiang jianghui _at_ umich.edu
  • Collection: -

Publications

Shi Y, Chinnaiyan AM, Jiang H "rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data." Bioinformatics. 2015 Jul 1;31(13):2222-4. Epub 2015 Feb 24. https://doi.org/10.1093/bioinformatics/btv119
PMID: 25717189
PMCID: PMC4481847


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