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rnaQUAST
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rnaQUAST

rnaQUAST is a tool to assess the quality of RNA-seq assemblies. The rnaQUAST uses a reference and a gene database to compute several quality metrics for the assembly correctness and completeness.



rnaQUAST

rnaQUAST is a tool to assess the quality of RNA-seq assemblies. The rnaQUAST uses a reference and a gene database to compute several quality metrics for the assembly correctness and completeness.

Topic

Transcriptome; Assembly; RNA-seq; Quality affairs

Details

  • Operation: Quality control report
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Mac OS X, Linux
  • License: Not stated
    • Cost: Free
  • Version name: 1.5.2
  • Credit: EMC Research and Development Department and St. Petersburg State University.
  • Contact: Andrey D. Prjibelski ap _at_ bioinf.spbau.ru
  • Collection: -

Publications

Bushmanova E, Antipov D, Lapidus A, Suvorov V, Prjibelski AD "rnaQUAST: a quality assessment tool for de novo transcriptome assemblies." Bioinformatics. 2016 Jul 15;32(14):2210-2. Epub 2016 Apr 23. https://doi.org/10.1093/bioinformatics/btw218
PMID: 27153654


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