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scAPA
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scAPA

scAPA is a tool for the analysis of alternative polyadenylation in single-cell RNA-seq (scRNA-seq) data.



scAPA

scAPA is a tool for the analysis of alternative polyadenylation in single-cell RNA-seq (scRNA-seq) data.

Topic

RNA-seq

Details

  • Operation: PolyA signal detection
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: BSD-3-Clause
    • Cost: Free
  • Version name: -
  • Credit: Israel Science Foundation, DIP German–Israeli Project cooperation, Edmond J. Safra Center for Bioinformatics at Tel Aviv University, TAU.
  • Contact: Ran Elkon ranel _at_ tauex.tau.ac.il | Eldad David Shulman eldadshulman _at_ mail.tau.ac.il
  • Collection: -

Publications

Shulman ED, Elkon R "Cell-type-specific analysis of alternative polyadenylation using single-cell transcriptomics data." Nucleic Acids Res. 2019 Nov 4;47(19):10027-10039. https://doi.org/10.1093/nar/gkz781
PMID: 31501864
PMCID: PMC6821429


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