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scRNABatchQC

scRNABatchQC

scRNABatchQC is a tool for QC and comparison of datasets, and generation reports in single-cell RNA-seq (scRNA-seq) datasets.

Topic

Transcriptomics; RNA-seq; Gene expression

Details

  • Operation: Comparison; Quality control report
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X
  • License: GNU Lesser General Public License v>=2
  • Cost: Free
  • Version name: 0.9.11
  • Credit: The National Cancer Institute.
  • Contact: Yu Shyr yu.shyr _at_ vanderbilt.edu
  • Collection: -

Publications

Liu Q, Sheng Q, Ping J, Ramirez MA, Lau KS, Coffey RJ, Shyr Y "scRNABatchQC: multi-samples quality control for single cell RNA-seq data." Bioinformatics. 2019 Dec 15;35(24):5306-5308. https://doi.org/10.1093/bioinformatics/btz601
PMID: 31373345
PMCID: PMC6954654


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