sleuth, an R tool for differential analysis and benchmarking RNA-seq experiments. The sleuth package analyzes and benchmarks data, quantified by the kallisto tool (see links). sleuth also includes interactive graphical visualization tools.
Statistics and probability; RNA-seq; Gene expression
Pimentel H, Bray NL, Puente S, Melsted P, Pachter L "Differential analysis of RNA-seq incorporating quantification uncertainty." Nat Methods. 2017 Jul;14(7):687-690. https://doi.org/10.1038/nmeth.4324
PMID: 28581496
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