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spongeScan
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spongeScan

spongeScan is a web-based tool for identification and visualization of long non-coding RNAs (lncRNAs) response elements (MREs) that function as miRNA sponges.



spongeScan

spongeScan is a web-based tool for identification and visualization of long non-coding RNAs (lncRNAs) response elements (MREs) that function as miRNA sponges.

Topic

RNA; RNA-Seq; Functional, regulatory and non-coding RNA; Data visualisation

Details

  • Operation: miRNA expression analysis
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
    • Maturity: Mature
  • Credit: FP7 STATegra project, MINECO, European Regional Development Funds (ERDF), European Molecular Biology Laboratory (EMBL), the European Union and ERC Seventh Framework Programme, University of Florida.
  • Contact: Pedro Furio-Tari, pedro.furio _at_ genomicsengland.co.uk | Sonia Tarazona, starazona _at_ cipf.es | Toni Gabaldon, tgabaldon _at_ crg.es | Anton Enright, aje _at_ ebi.ac.uk | Ana Conesa, aconesa _at_ cipf.es
  • Collection: -

Publications

Furio-Tari P, Tarazona S, Gabaldon T, Enright AJ, Conesa A "spongeScan: A web for detecting microRNA binding elements in lncRNA sequences." Nucleic Acids Res. 2016 Jul 8;44(W1):W176-80. May 19. https://doi.org/10.1093/nar/gkw443
PMID: 27198221
PMCID: PMC4987953


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