velocyto is a tool to estimate gene-specific transcriptional derivatives and visualization of single-cell RNA-seq (scRNA-seq) data. The velocyto algorithm uses velocity patterns.
RNA-seq; Gene expression; Transcriptomics
La Manno G, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, Fan J, Borm LE, Liu Z, van Bruggen D, Guo J, He X, Barker R, Sundström E, Castelo-Branco G, Cramer P, Adameyko I, Linnarsson S, Kharchenko PV "RNA velocity of single cells." Nature. 2018 Aug;560(7719):494-498. https://doi.org/10.1038/s41586-018-0414-6
PMID: 30089906
PMCID: PMC6130801
Svensson V, Pachter L "RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq." Mol Cell. 2018 Oct 4;72(1):7-9. https://doi.org/10.1016/j.molcel.2018.09.026
PMID: 30290149
Klein AM "Technique to measure the expression dynamics of each gene in a single cell." Nature. 2018 Aug;560(7719):434-435. https://doi.org/10.1038/d41586-018-05882-8
PMID: 30127477
Burgess DJ "Full speed ahead for single-cell analysis." Nat Rev Genet. 2018 Nov;19(11):668-669. https://doi.org/10.1038/s41576-018-0049-3
PMID: 30154482
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