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visTrajectory

visTrajectory

visTrajectory is a tool to visualize high-dimensional datasets in RNA-seq data. The algorithm is based on Bayesian Unidimensional Scaling (BUDS) method to extract principal variation sources from high-dimensional data.

Topic

Genetic variation; RNA-seq

Details

  • Operation: Expression data visualisation; Pathway or network visualisation
  • Software interface: Web user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: National Institutes of Health (NIH) Transformative Research Grant.
  • Contact: Nguyen LH lanhuong _at_ stanford.edu
  • Collection: -

Publications

Nguyen LH, Holmes S "Bayesian Unidimensional Scaling for visualizing uncertainty in high dimensional datasets with latent ordering of observations." BMC Bioinformatics 2017; 18(Suppl 10):394 https://doi.org/10.1186/s12859-017-1790-x
PMID: 28929970
PMCID: PMC5606221


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