KmerGenie is a tool for automatic estimation of the best k-mer to use for de Bruijn graph based genome assembly. It implements fast and accurate sampling method to produce abundance histograms for k-mers, which then leads to the best possible k-mer value using a heuristic method.
Sequence assembly
Chikhi R, Medvedev P "Informed and automated k-mer size selection for genome assembly." Bioinformatics. 2014 Jan 1;30(1):31-7. 2013 Jun 3. https://doi.org/10.1093/bioinformatics/btt310
PMID: 23732276
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