For better experience, turn on JavaScript!


VCAKE

VCAKE

VCAKE is a tool for short read-based genome assembly using a modification of simple k-mer extension method and it accounts for sequencing error by taking advantage of high read coverage. It is a modification of the assembler SSAKE.

Topic

Sequence assembly

Details

Publications

Jeck WR, Reinhardt JA, Baltrus DA, Hickenbotham MT, Magrini V, Mardis ER, Dangl JL, Jones CD "Extending assembly of short DNA sequences to handle error." Bioinformatics. 2007 Nov 1;23(21):2942-4. Epub 2007 Sep 24. https://doi.org/10.1093/bioinformatics/btm451
PMID: 17893086


Download and documentation








If you find errors, please report here.