runBNG is a wrapper script written in Bash to automate tasks for BioNano optical map data. It is a substitute to IrysView, which only works on Windows based platform. It performs optical map de novo assembly, super-scaffolding, and structural variant detection based on functions implemented in IrysView.
Sequence assembly
Yuan Y, Bayer PE, Lee HT, Edwards D "runBNG: a software package for BioNano genomic analysis on the command line." Bioinformatics. 2017 Oct 1;33(19):3107-3109. https://doi.org/10.1093/bioinformatics/btx366
PMID: 28605539
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