13Check_RNA

13Check_RNA evaluates and corrects systematic errors in 13C chemical shift (CS) assignments of RNA to improve the accuracy of structural information derived from chemical shifts.


Key Features:

  • Error Correction: Implements an existing method to identify and correct systematic errors in 13C chemical shift (CS) assignments of RNA.
  • Output Formats: Produces results in NMR-STAR format for integration with NMR data workflows and databases.
  • Implementation: Implemented as a Python module.

Scientific Applications:

  • Structural biology: Provides corrected 13C CS assignments to improve the reliability of RNA structural analyses.
  • Data curation and deposition: Supports re-referencing and correction of 13C CS data prior to deposition into the Biological Magnetic Resonance Data Bank (BMRB).

Methodology:

Builds upon an existing method to systematically identify and correct errors in 13C chemical shift data for RNA by recalibrating CS values.

Topics

Details

License:
MIT
Maturity:
Mature
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
7/6/2019
Last Updated:
6/16/2020

Operations

Data Inputs & Outputs

Publications

Icazatti AA, Martin OA, Villegas M, Szleifer I, Vila JA. 13Check_RNA: a tool to evaluate 13C chemical shift assignments of RNA. Bioinformatics. 2018;34(23):4124-4126. doi:10.1093/bioinformatics/bty470.

Funding: - Consejo Nacional de Investigaciones Científicas y Técnicas: PIP-0087 - Agencia Nacional de Promoción Científica y Tecnológica: PICT-0218, PICT-0767

Documentation

Links