13Check_RNA
13Check_RNA evaluates and corrects systematic errors in 13C chemical shift (CS) assignments of RNA to improve the accuracy of structural information derived from chemical shifts.
Key Features:
- Error Correction: Implements an existing method to identify and correct systematic errors in 13C chemical shift (CS) assignments of RNA.
- Output Formats: Produces results in NMR-STAR format for integration with NMR data workflows and databases.
- Implementation: Implemented as a Python module.
Scientific Applications:
- Structural biology: Provides corrected 13C CS assignments to improve the reliability of RNA structural analyses.
- Data curation and deposition: Supports re-referencing and correction of 13C CS data prior to deposition into the Biological Magnetic Resonance Data Bank (BMRB).
Methodology:
Builds upon an existing method to systematically identify and correct errors in 13C chemical shift data for RNA by recalibrating CS values.
Topics
Details
- License:
- MIT
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 7/6/2019
- Last Updated:
- 6/16/2020
Operations
Data Inputs & Outputs
Deposition
Inputs
Outputs
Publications
Icazatti AA, Martin OA, Villegas M, Szleifer I, Vila JA. 13Check_RNA: a tool to evaluate 13C chemical shift assignments of RNA. Bioinformatics. 2018;34(23):4124-4126. doi:10.1093/bioinformatics/bty470.
Funding: - Consejo Nacional de Investigaciones Científicas y Técnicas: PIP-0087
- Agencia Nacional de Promoción Científica y Tecnológica: PICT-0218, PICT-0767
Documentation
Links
Issue tracker
https://github.com/BIOS-IMASL/13Check_RNA/issues