ASD-DiagNet

ASD-DiagNet classifies Autism Spectrum Disorder from functional Magnetic Resonance Imaging (fMRI) data by extracting features with an autoencoder and classifying them using a single-layer perceptron to improve diagnostic accuracy.


Key Features:

  • Machine Learning Framework: Employs a hybrid learning approach integrating an autoencoder with a single-layer perceptron (SLP) for feature extraction and classification.
  • Data Augmentation Strategy: Generates synthetic feature vectors through linear interpolation of existing feature vectors to mitigate small fMRI sample sizes.
  • Efficiency and Performance: On the Autism Brain Imaging Data Exchange (ABIDE) public dataset (1,035 subjects from 17 centers) it reported up to a 28% increase in classification accuracy reaching 82% and reduced execution time from approximately seven hours to about 40 minutes.

Scientific Applications:

  • Biomarker identification: Identification of quantitative biomarkers associated with ASD from fMRI-derived features.
  • Diagnostic classification: Assist classification between ASD subjects and healthy controls using fMRI features for quantitative diagnostic indicators.
  • Neurobiological research and early intervention: Provide insights into neurobiological underpinnings of autism and support improved screening that may facilitate early intervention strategies.

Methodology:

Feature extraction using an autoencoder; classification using a single-layer perceptron; data augmentation via linear interpolation of feature vectors.

Topics

Details

License:
GPL-3.0
Programming Languages:
Python
Added:
1/14/2020
Last Updated:
12/2/2020

Operations

Publications

Eslami T, Mirjalili V, Fong A, Laird AR, Saeed F. ASD-DiagNet: A Hybrid Learning Approach for Detection of Autism Spectrum Disorder Using fMRI Data. Frontiers in Neuroinformatics. 2019;13. doi:10.3389/fninf.2019.00070. PMID:31827430. PMCID:PMC6890833.

PMID: 31827430
PMCID: PMC6890833
Funding: - National Science Foundation: CAREER ACI-1651724, CRII CCF- 1855441, NSF CRII CCF-1464268, OAC 1925960 - National Institutes of Health: R15GM120820