AliTV

AliTV visualizes whole-genome alignments to enable comparative analysis of genome evolution dynamics.

Key Features:

• Interactive Visualization: Provides interactive visualization of whole-genome alignments as linear maps.
• Data Input Flexibility: Reads multiple whole-genome alignments or automatically generates alignments from provided data.
• Support for Annotations and Phylogenetic Information: Supports optional feature annotations and phylogenetic information in analyses and visualizations.

Scientific Applications:

• Comparative Genomics: Enables comparison of genome-wide alignment data to investigate genome structure and evolution.
• Evolutionary and Functional Analysis: Assists interpretation of evolutionary relationships and functional dynamics from whole-genome alignments.

Methodology:

Reads multiple whole-genome alignments or generates alignments from provided data, visualizes alignments as linear maps, and supports incorporation of optional feature annotations and phylogenetic information; an example dataset comprises seven chloroplast genomes.