Astrocyte Quantification and Analysis (AQuA)
Astrocyte Quantification and Analysis (AQuA) quantifies astrocytic fluorescence imaging data and models spatially unfixed, size-varying, propagative calcium and neurotransmitter events.
Key Features:
- Event-Based Analytical Framework: AQuA employs an event-based perspective that models and quantifies calcium and neurotransmitter dynamics that are spatially unfixed, size-varying, and propagative in fluorescence imaging datasets.
- Data-Driven Approach: AQuA leverages machine learning algorithms to adapt to different model organisms, fluorescent indicators, experimental modes, imaging resolutions, and speeds.
- Comprehensive Data Description: AQuA derives physiologically relevant parameters to describe astrocytic activity at single-cell and population levels.
Scientific Applications:
- Astrocyte Physiology Research: AQuA enables investigation of the spatiotemporal dynamics of astrocytic calcium signaling relevant to neural communication and brain function.
- Neuroscience Studies: AQuA analyzes complex fluorescence imaging data to study synaptic activity, neurotransmitter release, and neuroglial interactions.
Methodology:
AQuA applies an event-based analytical framework and machine learning algorithms to process and interpret fluorescence imaging data, focusing on events rather than predefined regions of interest.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- desktop application, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- MATLAB
- Added:
- 10/13/2019
- Last Updated:
- 11/25/2024
Operations
Publications
Wang Y, DelRosso NV, Vaidyanathan TV, Cahill MK, Reitman ME, Pittolo S, Mi X, Yu G, Poskanzer KE. Accurate quantification of astrocyte and neurotransmitter fluorescence dynamics for single-cell and population-level physiology. Nature Neuroscience. 2019;22(11):1936-1944. doi:10.1038/s41593-019-0492-2. PMID:31570865. PMCID:PMC6858541.
Documentation
Downloads
- Software packagehttps://github.com/yu-lab-vt/aqua