BIII (BioImage Informatics Index, biii.eu)
BIII (BioImage Informatics Index, biii.eu) is a registry of software tools, image databases for benchmarking, and training materials for bioimage analysis. Software tools are organized as either a full protocol of analysis (workflow), a specific component to construct a workflow, or a software platform or library (collection). They are described using EDAM-bioimaging. All entries are exposed following FAIR principles and accessible for other usage with ODC-By v1.0 license.
Topics
Collections
Details
- License:
- Other
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- web application
- Programming Languages:
- JavaScript, PHP, Python
- Added:
- 11/5/2019
- Last Updated:
- 3/26/2021
Operations
Documentation
Contributions policy
https://biii.eu/howtocurateOther
https://bioportal.bioontology.org/ontologies/EDAM-BIOIMAGINGDocumentation about the ontology used for tools topics and operations
Other
http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/NeuBIAS/bise-core-ontology/master/owl-ontology/bise-core-ontology-v1.owlDocumentation about the ontology used for tools description
Other
http://biii.eu/soft?_format=jsonList of all software. Note that all entries and workflows can be exported as JSON.
Downloads
- Source codehttps://github.com/NeuBIAS/bise/wikiDevelopement instructions to contribute to the tool using Docker and Lando
Links
Issue tracker
https://github.com/NeuBIAS/bise/issuesTechnical monitoring
http://test.biii.eu/(test version (dev) before developement on production site biii.eu)