BiasDB
BiasDB catalogs literature-reported biased G protein-coupled receptor (GPCR) ligands and their signaling profiles for comparative analysis.
Key Features:
- Comprehensive data collection: Contains 615 documented cases of signaling bias covering 481 individual ligands across 61 receptors, with entries aggregated from the literature.
- Detailed ligand annotations: Records include chemical structure, target receptor, type of signaling bias, assay categories used for determining bias, reference ligands, and literature sources.
- Manual curation and analysis: Entries are manually curated and the assembled dataset is analyzed to identify trends and patterns in biased GPCR signaling.
Scientific Applications:
- Medicinal chemistry: Supports design and optimization of biased ligands by providing annotated examples of signaling bias and reference compounds.
- Pharmacology: Enables comparative analysis of GPCR signaling pathways and the functional selectivity of ligands across assay categories.
- Research and hypothesis generation: Serves as a compiled reference for exploring biased GPCR signaling, planning experiments, and deriving structure–activity relationships.
Methodology:
Entries were compiled through rigorous manual curation of published literature reporting biased GPCR ligands and associated assay annotations, and the dataset was analyzed to characterize bias patterns.
Topics
Collections
Details
- Cost:
- Free of charge
- Operating Systems:
- Windows, Linux, Mac
- Added:
- 11/14/2019
- Last Updated:
- 2/15/2024
Operations
Publications
Omieczynski C, Nguyen TN, Sribar D, Deng L, Stepanov D, Schaller D, Wolber G, Bermudez M. BiasDB: A Comprehensive Database for Biased GPCR Ligands. Unknown Journal. 2019. doi:10.1101/742643.
DOI: 10.1101/742643