CytoMegaloVirus DataBase (CMVdb)
CytoMegaloVirus DataBase (CMVdb) aggregates and harmonizes omics, genomic, strain, protein, and drug information for human cytomegalovirus (CMV), a double-stranded DNA virus of the herpesvirus family, to support comparative and translational CMV research.
Key Features:
- Comprehensive Data Integration: Integrates datasets from public biological databases, virus taxonomy databanks, viral databases, and drug banks into a harmonized repository.
- Detailed Strains and Genomics: Provides strain-level metadata, gene annotations, expressed protein records, and genomic sequences for CMV.
- Therapeutic Data: Includes curated information on drugs used for treating cytomegalovirus infections and associated drug-related metadata.
- In-House Data Analysis: Performs in-house processing and analysis of aggregated CMV omics and genomic data.
Scientific Applications:
- Comparative Genomics: Enables analysis of CMV genetic diversity and strain relationships using genomic sequences and gene/protein annotations.
- Pathogenesis and Immunology: Supports investigation of CMV gene and protein functions relevant to immune evasion and disease, including studies in immunocompromised patients.
- Therapeutic Development: Facilitates identification and evaluation of antiviral compounds and drug–target relationships for CMV.
Methodology:
Aggregates and harmonizes datasets from public biological, virus taxonomy, viral, and drug databases and performs in-house processing of the integrated omics, genomic, strain, protein, and drug data.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/14/2020
- Last Updated:
- 12/16/2020
Operations
Publications
Kaushik AC, Mehmood A, Upadhyay AK, Paul S, Srivastava S, Mali P, Xiong Y, Dai X, Wei D, Sahi S. CytoMegaloVirus Infection Database: A Public Omics Database for Systematic and Comparable Information of CMV. Interdisciplinary Sciences: Computational Life Sciences. 2019;12(2):169-177. doi:10.1007/s12539-019-00350-x. PMID:31813095.