CytoMegaloVirus DataBase (CMVdb)

CytoMegaloVirus DataBase (CMVdb) aggregates and harmonizes omics, genomic, strain, protein, and drug information for human cytomegalovirus (CMV), a double-stranded DNA virus of the herpesvirus family, to support comparative and translational CMV research.


Key Features:

  • Comprehensive Data Integration: Integrates datasets from public biological databases, virus taxonomy databanks, viral databases, and drug banks into a harmonized repository.
  • Detailed Strains and Genomics: Provides strain-level metadata, gene annotations, expressed protein records, and genomic sequences for CMV.
  • Therapeutic Data: Includes curated information on drugs used for treating cytomegalovirus infections and associated drug-related metadata.
  • In-House Data Analysis: Performs in-house processing and analysis of aggregated CMV omics and genomic data.

Scientific Applications:

  • Comparative Genomics: Enables analysis of CMV genetic diversity and strain relationships using genomic sequences and gene/protein annotations.
  • Pathogenesis and Immunology: Supports investigation of CMV gene and protein functions relevant to immune evasion and disease, including studies in immunocompromised patients.
  • Therapeutic Development: Facilitates identification and evaluation of antiviral compounds and drug–target relationships for CMV.

Methodology:

Aggregates and harmonizes datasets from public biological, virus taxonomy, viral, and drug databases and performs in-house processing of the integrated omics, genomic, strain, protein, and drug data.

Topics

Details

Tool Type:
web application
Added:
1/14/2020
Last Updated:
12/16/2020

Operations

Publications

Kaushik AC, Mehmood A, Upadhyay AK, Paul S, Srivastava S, Mali P, Xiong Y, Dai X, Wei D, Sahi S. CytoMegaloVirus Infection Database: A Public Omics Database for Systematic and Comparable Information of CMV. Interdisciplinary Sciences: Computational Life Sciences. 2019;12(2):169-177. doi:10.1007/s12539-019-00350-x. PMID:31813095.

PMID: 31813095
Funding: - Ministry of Science and Technology of the People's Republic of China: 2016YFA0501703, 2018ZX10302-205-004, 2018ZX10302205-004-002 - National Natural Science Foundation of China: 61503244, 61832019, BK20161130 - State Key Lab of Microbial Metabolism and Joint Research Funds for Medical and Engineering and Scientific Research at Shanghai Jiao Tong University: YG2017ZD14 - Government of Jiangsu Province: SWYY-128 - Science and Technology Department of Henan Province: 161100311400 - The Technology Development Funding of Wuxi: WX18IVJN017 - Jiangnan University: 1286010241170320)

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