CSF-PR
CSF-PR aggregates quantitative cerebrospinal fluid (CSF) mass spectrometry–based proteomics data from the peer-reviewed literature to support comparative analysis of protein abundances across neurological disorders, including multiple sclerosis, Alzheimer's disease, and Parkinson's disease.
Key Features:
- Data aggregation: Mines peer-reviewed literature to compile mass spectrometry–based proteomics studies and extract quantitative protein data from CSF samples.
- Disease coverage: Focuses on protein abundance data associated with multiple sclerosis, Alzheimer's disease, and Parkinson's disease.
- Comparative analysis: Enables comparison of protein abundances across disease groups and subcategories to reveal increases or decreases in specific proteins.
- Visualization tools: Provides visual representations of abundance changes across diseases to aid identification of potential biomarkers and interpretation of disease mechanisms.
- Data export: Supplies compiled quantitative proteomics data for integration into downstream analyses or publications.
Scientific Applications:
- Biomarker discovery: Supports identification of CSF proteins with differential abundance across neurological disorders for candidate biomarkers.
- Comparative proteomics: Facilitates cross-disease comparisons among multiple sclerosis, Alzheimer's disease, and Parkinson's disease to identify shared and distinct proteomic signatures.
- Literature synthesis and meta-analysis: Provides a curated compilation of quantitative CSF proteomics results to enable synthesis of published findings without individual study re-review.
Methodology:
Systematically mines peer-reviewed literature to extract quantitative mass spectrometry–based proteomics data from cerebrospinal fluid (CSF) studies.
Topics
Details
- Tool Type:
- web application
- Added:
- 11/14/2019
- Last Updated:
- 12/17/2020
Operations
Publications
Guldbrandsen A, Farag YM, Lereim RR, Berven FS, Barsnes H. Essential Features and Use Cases of the Cerebrospinal Fluid Proteome Resource (CSF-PR). Methods in Molecular Biology. 2019. doi:10.1007/978-1-4939-9706-0_25. PMID:31432427.
PMID: 31432427