ChemDataExtractor
ChemDataExtractor extracts UV/vis absorption spectroscopy data and associated optical properties from scientific literature for integration with computational electronic-structure predictions.
Key Features:
- Automated Database Generation: Generates a database containing 18,309 records of experimentally determined UV/vis absorption maxima (λmax) and extinction coefficients (ϵ).
- High-throughput Document Mining: Processes 402,034 scientific documents to compile optical-property data at scale.
- Refined Table Extraction Mechanics: Employs refined table extraction mechanics to improve accuracy in retrieving λmax and ϵ from literature tables.
- Integration with Electronic-Structure Calculations: Facilitates high-throughput electronic-structure calculations using the simplified Tamm-Dancoff approach and time-dependent density functional theory to predict λmax and oscillation strengths (f).
- Data Correlation: Produces strong correlations between experimental and computational λmax, f, and ϵ to support validation of in silico predictions.
- Dataset Composition: Includes 8,488 unique compounds, with 5,380 compounds featuring paired experimental and computational data.
- Output Formats: Provides datasets in MongoDB, CSV, and JSON formats.
Scientific Applications:
- Optoelectronic Materials Discovery: Supplies an integrated experimental and computational dataset (8,488 compounds; 5,380 paired) for screening and discovery of optoelectronic materials.
- Computational Validation of Optical Properties: Enables validation of time-dependent density functional theory and simplified Tamm-Dancoff predictions against experimental λmax, f, and ϵ.
Methodology:
Refined table extraction mechanics extract λmax and ϵ from literature and automated processing of 402,034 documents generates the database; high-throughput electronic-structure calculations use the simplified Tamm-Dancoff approach and time-dependent density functional theory to predict λmax and oscillation strengths (f).
Topics
Details
- License:
- MIT
- Programming Languages:
- Java, MATLAB, Python
- Added:
- 1/14/2020
- Last Updated:
- 12/11/2020
Operations
Publications
Beard EJ, Sivaraman G, Vázquez-Mayagoitia Á, Vishwanath V, Cole JM. Comparative dataset of experimental and computational attributes of UV/vis absorption spectra. Scientific Data. 2019;6(1). doi:10.1038/s41597-019-0306-0. PMID:31804487. PMCID:PMC6895184.
Documentation
Downloads
- Downloads pagehttp://chemdataextractor.org/download