ColonySizeDistributions
ColonySizeDistributions' is a software tool that aims to improve the biological and computational modeling of metastasis. Metastasis is responsible for most cancer-related deaths, so developing better methods to understand it is crucial. Current methods for modeling metastasis in mice involve either generating primary tumors by injecting human cells into immune-compromised mice or examining genetically engineered mice that develop tumors and eventually metastasize. These methods are time-consuming and don't provide information about size distribution or spatial localization of individual metastatic lesions. To address these limitations, the authors have developed an image-processing based method that uses tissue sections containing multiple subpopulations of disseminated cells located at metastatic sites in vivo. This method can also be adapted for high-throughput imaging of live or fixed cells in vitro to assess clonal fitness and evolution. However, the study requires a large cohort of mice to generate a robust dataset due to the inherent variation in mouse studies and the increasing complexity in experimental design that incorporates fate-mapping of individual cells. Overall, the use of high-throughput imaging techniques
Topic
Imaging;Oncology;Transcription factors and regulatory sites
Detail
Operation: Quantification;In vitro selection;Image analysis
Software interface: Command-line interface
Language: MATLAB
License: The MIT License
Cost: Free with restrictions
Version name: -
Credit: V Scholar Foundation, Susan G. Komen Foundation, The Jayne Koskinas Ted Giovanis Foundation for Health and Policy, the Breast Cancer Research Foundation.
Input: -
Output: -
Contact: Daniele M. Gilkes dgilkes@jhu.edu
Collection: -
Maturity: Stable
Publications
- A software tool for the quantification of metastatic colony growth dynamics and size distributions in vitro and in vivo.
- Bhoyar S, et al. A software tool for the quantification of metastatic colony growth dynamics and size distributions in vitro and in vivo. A software tool for the quantification of metastatic colony growth dynamics and size distributions in vitro and in vivo. 2018; 13:e0209591. doi: 10.1371/journal.pone.0209591
- https://doi.org/10.1371/journal.pone.0209591
- PMID: 30589908
- PMC: PMC6307751
Download and documentation
Source: https://github.com/sbhoyar1/ColonySizeDistributions/archive/v1.0.zip
Documentation: https://github.com/sbhoyar1/ColonySizeDistributions/blob/master/Readme.docx?raw=true
Home page: https://github.com/sbhoyar1/ColonySizeDistributions
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