ColonySizeDistributions

ColonySizeDistributions' is a software tool that aims to improve the biological and computational modeling of metastasis. Metastasis is responsible for most cancer-related deaths, so developing better methods to understand it is crucial. Current methods for modeling metastasis in mice involve either generating primary tumors by injecting human cells into immune-compromised mice or examining genetically engineered mice that develop tumors and eventually metastasize. These methods are time-consuming and don't provide information about size distribution or spatial localization of individual metastatic lesions. To address these limitations, the authors have developed an image-processing based method that uses tissue sections containing multiple subpopulations of disseminated cells located at metastatic sites in vivo. This method can also be adapted for high-throughput imaging of live or fixed cells in vitro to assess clonal fitness and evolution. However, the study requires a large cohort of mice to generate a robust dataset due to the inherent variation in mouse studies and the increasing complexity in experimental design that incorporates fate-mapping of individual cells. Overall, the use of high-throughput imaging techniques

Topic

Imaging;Oncology;Transcription factors and regulatory sites

Detail

  • Operation: Quantification;In vitro selection;Image analysis

  • Software interface: Command-line interface

  • Language: MATLAB

  • License: The MIT License

  • Cost: Free with restrictions

  • Version name: -

  • Credit: V Scholar Foundation, Susan G. Komen Foundation, The Jayne Koskinas Ted Giovanis Foundation for Health and Policy, the Breast Cancer Research Foundation.

  • Input: -

  • Output: -

  • Contact: Daniele M. Gilkes dgilkes@jhu.edu

  • Collection: -

  • Maturity: Stable

Publications

  • A software tool for the quantification of metastatic colony growth dynamics and size distributions in vitro and in vivo.
  • Bhoyar S, et al. A software tool for the quantification of metastatic colony growth dynamics and size distributions in vitro and in vivo. A software tool for the quantification of metastatic colony growth dynamics and size distributions in vitro and in vivo. 2018; 13:e0209591. doi: 10.1371/journal.pone.0209591
  • https://doi.org/10.1371/journal.pone.0209591
  • PMID: 30589908
  • PMC: PMC6307751

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