CoreSlicer

CoreSlicer extracts and measures morphomic markers from computed tomography (CT) images to quantify body composition biomarkers.


Key Features:

  • Morphomic marker extraction: Performs extraction and measurement of morphomic markers from CT images.
  • Muscle and fat composition quantification: Measures muscle and fat composition from CT-derived morphomic markers.
  • DICOM data handling: Includes DICOM viewing tools for handling CT image data.
  • Extensible plugin interface: Provides an extensible plugin interface to develop and validate new morphomic markers.
  • Validation against reference software: Published validation studies report high agreement between CoreSlicer measurements and established reference software.

Scientific Applications:

  • Operative risk prediction (cardiovascular): Supports operative risk prediction across cardiovascular patient populations using CT-derived morphomic markers.
  • Body composition biomarker research: Enables quantification of body composition biomarkers from CT for clinical and translational studies.
  • Method development and validation: Facilitates development and validation of new morphomic markers through plugin workflows and comparison to reference software.

Methodology:

Extraction and measurement of morphomic markers from CT DICOM images using built-in DICOM viewing tools and an extensible plugin interface, with validation via comparison to established reference software.

Topics

Details

License:
MIT
Maturity:
Mature
Cost:
Free of charge
Tool Type:
api, web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
6/21/2019
Last Updated:
6/16/2020

Operations

Publications

Mullie L, Afilalo J. CoreSlicer: a web toolkit for analytic morphomics. BMC Medical Imaging. 2019;19(1). doi:10.1186/s12880-019-0316-6. PMID:30744586. PMCID:PMC6371488.

Documentation

Links