CoreSlicer
CoreSlicer extracts and measures morphomic markers from computed tomography (CT) images to quantify body composition biomarkers.
Key Features:
- Morphomic marker extraction: Performs extraction and measurement of morphomic markers from CT images.
- Muscle and fat composition quantification: Measures muscle and fat composition from CT-derived morphomic markers.
- DICOM data handling: Includes DICOM viewing tools for handling CT image data.
- Extensible plugin interface: Provides an extensible plugin interface to develop and validate new morphomic markers.
- Validation against reference software: Published validation studies report high agreement between CoreSlicer measurements and established reference software.
Scientific Applications:
- Operative risk prediction (cardiovascular): Supports operative risk prediction across cardiovascular patient populations using CT-derived morphomic markers.
- Body composition biomarker research: Enables quantification of body composition biomarkers from CT for clinical and translational studies.
- Method development and validation: Facilitates development and validation of new morphomic markers through plugin workflows and comparison to reference software.
Methodology:
Extraction and measurement of morphomic markers from CT DICOM images using built-in DICOM viewing tools and an extensible plugin interface, with validation via comparison to established reference software.
Topics
Details
- License:
- MIT
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- api, web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 6/21/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Mullie L, Afilalo J. CoreSlicer: a web toolkit for analytic morphomics. BMC Medical Imaging. 2019;19(1). doi:10.1186/s12880-019-0316-6. PMID:30744586. PMCID:PMC6371488.
Documentation
Links
Issue tracker
https://github.com/louismullie/coreslicer/issues