CoverageTool

CoverageTool quantifies visual plant traits from images by computing absolute area (cm²) and relative coverage (%) to support plant phenotyping and comparative analyses.


Key Features:

  • Absolute and relative area calculations: Computes absolute area measurements in cm² and relative coverage areas as percentages.
  • Semi-automated image analysis: Provides a semi-automated approach for image-based characterization of plant traits with reduced manual intervention.
  • Operator-defined color selection: Requires subjective color selections by the operator to delineate regions for analysis, with consistent application across samples enabling quantitative comparisons.
  • Quantification of diverse traits: Measures tissue culture parameters, ground surface coverage by annual plant canopies, projected surface areas of roots and leaves, and leaf senescence area ratios.
  • Cross-study applicability: Applicable across multiple experimental contexts to quantify visual plant phenotypes and investigate biological and environmental effects.

Scientific Applications:

  • Plant phenotyping: Provides quantitative measurements of visual traits for phenotypic characterization.
  • Tissue culture analysis: Quantifies tissue culture parameters from images.
  • Canopy ground cover estimation: Estimates ground surface coverage by annual plant canopies.
  • Root and leaf area measurement: Measures projected surface areas of roots and leaves from images.
  • Leaf senescence quantification: Calculates leaf senescence area ratios to quantify senescence.
  • Ecology and environmental studies: Supports investigation of biological and environmental effects on visual plant traits.

Methodology:

Performs semi-automated image analysis using operator-defined color selection to compute absolute area (cm²) and relative coverage (%) measurements.

Topics

Details

Tool Type:
desktop application
Operating Systems:
Windows
Programming Languages:
C
Added:
11/14/2019
Last Updated:
12/16/2020

Operations

Publications

Merchuk-Ovnat L, Ovnat Z, Amir-Segev O, Kutsher Y, Saranga Y, Reuveni M. CoverageTool: A semi-automated graphic software: applications for plant phenotyping. Plant Methods. 2019;15(1). doi:10.1186/s13007-019-0472-2. PMID:31404403. PMCID:PMC6683572.