CoverageTool
CoverageTool quantifies visual plant traits from images by computing absolute area (cm²) and relative coverage (%) to support plant phenotyping and comparative analyses.
Key Features:
- Absolute and relative area calculations: Computes absolute area measurements in cm² and relative coverage areas as percentages.
- Semi-automated image analysis: Provides a semi-automated approach for image-based characterization of plant traits with reduced manual intervention.
- Operator-defined color selection: Requires subjective color selections by the operator to delineate regions for analysis, with consistent application across samples enabling quantitative comparisons.
- Quantification of diverse traits: Measures tissue culture parameters, ground surface coverage by annual plant canopies, projected surface areas of roots and leaves, and leaf senescence area ratios.
- Cross-study applicability: Applicable across multiple experimental contexts to quantify visual plant phenotypes and investigate biological and environmental effects.
Scientific Applications:
- Plant phenotyping: Provides quantitative measurements of visual traits for phenotypic characterization.
- Tissue culture analysis: Quantifies tissue culture parameters from images.
- Canopy ground cover estimation: Estimates ground surface coverage by annual plant canopies.
- Root and leaf area measurement: Measures projected surface areas of roots and leaves from images.
- Leaf senescence quantification: Calculates leaf senescence area ratios to quantify senescence.
- Ecology and environmental studies: Supports investigation of biological and environmental effects on visual plant traits.
Methodology:
Performs semi-automated image analysis using operator-defined color selection to compute absolute area (cm²) and relative coverage (%) measurements.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Windows
- Programming Languages:
- C
- Added:
- 11/14/2019
- Last Updated:
- 12/16/2020
Operations
Publications
Merchuk-Ovnat L, Ovnat Z, Amir-Segev O, Kutsher Y, Saranga Y, Reuveni M. CoverageTool: A semi-automated graphic software: applications for plant phenotyping. Plant Methods. 2019;15(1). doi:10.1186/s13007-019-0472-2. PMID:31404403. PMCID:PMC6683572.