CutpointsOEHR

CutpointsOEHR implements an R package that identifies two cut-points using the optimal equal-HR (Hazard Ratio) method to discretize continuous predictors with asymmetric U-shaped relationships to log relative hazards and selects cut-points that minimize the Akaike Information Criterion (AIC) of Cox proportional hazards models.


Key Features:

  • Novel Discretization Approach: Implements the optimal equal-HR method for finding cut-points when the relationship between a continuous predictor and log relative hazards is U-shaped and potentially asymmetric.
  • Equal Hazard Ratios: Determines two cut-points that produce equal log relative hazard values for balanced risk categorization.
  • Minimization of AIC: Optimizes cut-points to minimize the Akaike Information Criterion (AIC) of Cox proportional hazards models, improving model fit.
  • Comprehensive Simulation Study: Performance was evaluated via Monte Carlo simulations varying censoring proportions, baseline hazard functions, and asymmetry levels.
  • Comparative Advantage: Demonstrated superior discrimination and overall performance compared with median split, upper and lower quantiles, and minimum p-value approaches in asymmetric U-shaped scenarios.
  • Real-World Application: Applied to a small cell lung cancer dataset to obtain clinically meaningful cut-points with predictive performance in Cox regression models.

Scientific Applications:

  • Clinical and Epidemiological Research: Categorizes continuous variables for survival analysis in studies with right-censored outcomes and U-shaped predictor–hazard relationships.
  • Cox Model Optimization: Enhances interpretability and predictive performance of Cox proportional hazards models by providing data-driven discretization for continuous predictors.
  • Oncology and Risk Stratification: Supports patient classification and risk assessment in oncology studies, exemplified by application to small cell lung cancer data.

Methodology:

Identifying two cut-points that equalize log relative hazard values, optimizing those cut-points to minimize the Cox model AIC, and validating performance via Monte Carlo simulations varying censoring proportions, baseline hazard functions, and asymmetry levels.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
8/9/2019
Last Updated:
6/16/2020

Operations

Publications

Chen Y, Huang J, He X, Gao Y, Mahara G, Lin Z, Zhang J. A novel approach to determine two optimal cut-points of a continuous predictor with a U-shaped relationship to hazard ratio in survival data: simulation and application. BMC Medical Research Methodology. 2019;19(1). doi:10.1186/s12874-019-0738-4. PMID:31072334. PMCID:PMC6507062.

PMID: 31072334
PMCID: PMC6507062
Funding: - Science and Technology Foundation of Guangdong Province: 2014A020212713 - Natural Science Foundation of Guangdong Province: 2016A030313365 - National Natural Science Foundation of China: 81773545

Documentation

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