CutpointsOEHR
CutpointsOEHR implements an R package that identifies two cut-points using the optimal equal-HR (Hazard Ratio) method to discretize continuous predictors with asymmetric U-shaped relationships to log relative hazards and selects cut-points that minimize the Akaike Information Criterion (AIC) of Cox proportional hazards models.
Key Features:
- Novel Discretization Approach: Implements the optimal equal-HR method for finding cut-points when the relationship between a continuous predictor and log relative hazards is U-shaped and potentially asymmetric.
- Equal Hazard Ratios: Determines two cut-points that produce equal log relative hazard values for balanced risk categorization.
- Minimization of AIC: Optimizes cut-points to minimize the Akaike Information Criterion (AIC) of Cox proportional hazards models, improving model fit.
- Comprehensive Simulation Study: Performance was evaluated via Monte Carlo simulations varying censoring proportions, baseline hazard functions, and asymmetry levels.
- Comparative Advantage: Demonstrated superior discrimination and overall performance compared with median split, upper and lower quantiles, and minimum p-value approaches in asymmetric U-shaped scenarios.
- Real-World Application: Applied to a small cell lung cancer dataset to obtain clinically meaningful cut-points with predictive performance in Cox regression models.
Scientific Applications:
- Clinical and Epidemiological Research: Categorizes continuous variables for survival analysis in studies with right-censored outcomes and U-shaped predictor–hazard relationships.
- Cox Model Optimization: Enhances interpretability and predictive performance of Cox proportional hazards models by providing data-driven discretization for continuous predictors.
- Oncology and Risk Stratification: Supports patient classification and risk assessment in oncology studies, exemplified by application to small cell lung cancer data.
Methodology:
Identifying two cut-points that equalize log relative hazard values, optimizing those cut-points to minimize the Cox model AIC, and validating performance via Monte Carlo simulations varying censoring proportions, baseline hazard functions, and asymmetry levels.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 8/9/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Chen Y, Huang J, He X, Gao Y, Mahara G, Lin Z, Zhang J. A novel approach to determine two optimal cut-points of a continuous predictor with a U-shaped relationship to hazard ratio in survival data: simulation and application. BMC Medical Research Methodology. 2019;19(1). doi:10.1186/s12874-019-0738-4. PMID:31072334. PMCID:PMC6507062.