DNA-BOT

DNA-BOT automates low-cost, multi-part DNA assembly to enable construction of large libraries of DNA constructs for synthetic and molecular biology.


Key Features:

  • Low-cost automation: Performs automated DNA assembly with consumable costs reported between $1.50 and $5.50 per construct.
  • High accuracy and throughput: Demonstrated simultaneous assembly of 88 constructs composed of 10 genetic parts, indicating high accuracy for complex designs.
  • Integration with standardized assembly and liquid-handling hardware: Implements the BASIC standardized assembly method on OpenTrons liquid-handling hardware to execute automated builds.

Scientific Applications:

  • Exploration of genetic design space: Enables construction of extensive libraries of DNA constructs for systematic exploration of genetic design parameters.
  • Evaluation of genetic components in operon contexts: Facilitates evaluation of promoters, ribosome binding sites, and gene order within a three-gene operon design space.

Methodology:

Uses the BASIC standardized assembly method executed on OpenTrons liquid-handling hardware to automate multi-part DNA assembly.

Topics

Details

License:
MIT
Tool Type:
desktop application
Programming Languages:
Python
Added:
1/14/2020
Last Updated:
1/14/2021

Operations

Publications

Storch M, Haines MC, Baldwin GS. DNA-BOT: A low-cost, automated DNA assembly platform for synthetic biology. Unknown Journal. 2019. doi:10.1101/832139.

Storch M, Haines MC, Baldwin GS. DNA-BOT: a low-cost, automated DNA assembly platform for synthetic biology. Synthetic Biology. 2020;5(1). doi:10.1093/synbio/ysaa010. PMID:32995552. PMCID:PMC7476404.

PMID: 32995552
PMCID: PMC7476404
Funding: - Engineering and Physical Sciences Research Council: EP/R034915/1 - Biotechnology and Biological Sciences Research Council: BB/L027852/1 - EU H2020: 820699

Documentation