DRUDIT

DRUDIT predicts biological affinities of small molecules to support the design and repurposing of small-molecule modulators across diverse biological targets.


Key Features:

  • Molecular Descriptor Calculation: MOLDESTO (MOLecular DEScriptors TOol) computes over one thousand molecular descriptors for each compound.
  • Comprehensive Target Database: A curated repository of 250 biological targets with the capability to add external targets.
  • Multi-Target and On/Off-Target Prediction: Functions for predicting polypharmacology profiles and assessing collateral on- and off-target effects.
  • Target Resolution: Prediction functions support single-target identification, target similarity analysis, and discrimination between target isoforms.
  • Scalability and Performance: Deployed on four servers with each server able to execute eight jobs concurrently.

Scientific Applications:

  • Drug Repurposing: Predicts biological properties of new compounds and existing drugs to identify repurposing opportunities.
  • Polypharmacology Studies: Evaluates multi-target interaction profiles to characterize potential therapeutic effects and collateral interactions.
  • Target Similarity Analysis: Identifies similarities among biological targets to inform target selection and lead optimization.

Methodology:

MOLDESTO computes >1,000 molecular descriptors that are used by DRUDIT's predictive functions to estimate biological affinities, including multi-target and on/off-target analyses; predictions reference a 250-target database that can be extended with external targets and are executed on four servers with up to eight concurrent jobs per server.

Topics

Details

Tool Type:
web application
Added:
1/9/2020
Last Updated:
12/22/2020

Operations

Publications

Lauria A, Mannino S, Gentile C, Mannino G, Martorana A, Peri D. DRUDIT: web-based DRUgs DIscovery Tools to design small molecules as modulators of biological targets. Bioinformatics. 2019;36(5):1562-1569. doi:10.1093/bioinformatics/btz783. PMID:31605102.

PMID: 31605102
Funding: - University of Palermo: PJ_RIC_FFABR_2017_005832

Documentation