DRfit
DRfit analyzes discrete bivariate data from multi-well plate experiments by identifying replicates, computing means and standard errors, and fitting linear or logistic dose–response models to quantify experimental responses.
Key Features:
- Replicate identification: Automatically identifies replicate data points based on a predefined matrix layout typical of multi-well plates.
- Statistical calculations: Calculates means and standard errors for each set of identified replicates.
- Dose-response fitting: Fits averaged values using linear or logistic dose–response functions to model experimental effects.
Scientific Applications:
- Drug screening: Quantifies compound responses across concentration series in multi-well plate assays using dose–response models.
- Enzyme kinetics: Analyzes replicate measurements and fits response functions to characterize enzyme activity across conditions.
- Cellular response studies: Summarizes replicate data and models dose-dependent cellular responses from plate-based assays.
Methodology:
Identification of replicate data points based on a predefined matrix layout; calculation of means and standard errors for replicates; averaging of replicate values followed by fitting linear or logistic dose–response functions to the averaged data.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java
- Added:
- 8/3/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Hofmann A, Preston S, Cross M, Herath HMPD, Simon A, Gasser RB. DRfit: a Java tool for the analysis of discrete data from multi-well plate assays. BMC Bioinformatics. 2019;20(1). doi:10.1186/s12859-019-2891-5. PMID:31113359. PMCID:PMC6528253.