DRfit

DRfit analyzes discrete bivariate data from multi-well plate experiments by identifying replicates, computing means and standard errors, and fitting linear or logistic dose–response models to quantify experimental responses.


Key Features:

  • Replicate identification: Automatically identifies replicate data points based on a predefined matrix layout typical of multi-well plates.
  • Statistical calculations: Calculates means and standard errors for each set of identified replicates.
  • Dose-response fitting: Fits averaged values using linear or logistic dose–response functions to model experimental effects.

Scientific Applications:

  • Drug screening: Quantifies compound responses across concentration series in multi-well plate assays using dose–response models.
  • Enzyme kinetics: Analyzes replicate measurements and fits response functions to characterize enzyme activity across conditions.
  • Cellular response studies: Summarizes replicate data and models dose-dependent cellular responses from plate-based assays.

Methodology:

Identification of replicate data points based on a predefined matrix layout; calculation of means and standard errors for replicates; averaging of replicate values followed by fitting linear or logistic dose–response functions to the averaged data.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Java
Added:
8/3/2019
Last Updated:
6/16/2020

Operations

Publications

Hofmann A, Preston S, Cross M, Herath HMPD, Simon A, Gasser RB. DRfit: a Java tool for the analysis of discrete data from multi-well plate assays. BMC Bioinformatics. 2019;20(1). doi:10.1186/s12859-019-2891-5. PMID:31113359. PMCID:PMC6528253.

Documentation

Downloads