DisConICA
DisConICA assesses reproducibility and discriminability of functional brain networks derived from resting-state functional magnetic resonance imaging (rs-fMRI) to identify candidate biomarkers for brain disorders.
Key Features:
- Discover-Confirm Methodology: Employs a discover-confirm approach beginning with gRAICAR (generalized Ranking and Averaging Independent Component Analysis by Reproducibility) to identify reproducible independent components representing brain networks.
- Reproducibility Assessment: Identifies functional networks that are highly reproducible within separate clinical or control groups but not reproducible when groups are combined, as potential individual-level discriminators.
- Unsupervised Clustering Analysis: Applies unsupervised clustering to evaluate and validate the discriminative ability of discovered components between clinical and control groups.
- Integration with SPM, FSL and DICOM support: Interfaces with SPM (Statistical Parametric Mapping) and FSL (FMRIB Software Library) and processes raw DICOM images as part of neuroimaging analysis workflows.
Scientific Applications:
- Biomarker discovery from rs-fMRI: Facilitates identification of functional brain networks that may serve as robust indicators for distinguishing brain disorders from rs-fMRI data.
- Clinical differentiation of PTSD and PCS: Demonstrated on rs-fMRI data from US Army soldiers with PTSD, comorbid PCS + PTSD, and matched healthy combat controls to evaluate real-world discriminability.
Methodology:
Hypothesizes that networks reproducible within separate groups but not when merged are effective discriminators; uses gRAICAR in the discover phase for reproducibility assessment and unsupervised clustering in the confirm phase to validate discriminative power.
Topics
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Mac
- Programming Languages:
- MATLAB
- Added:
- 6/20/2019
- Last Updated:
- 11/24/2024
Operations
Publications
Syed MA, Yang Z, Rangaprakash D, Hu X, Dretsch MN, Katz JS, Denney TS, Deshpande G. DisConICA: a Software Package for Assessing Reproducibility of Brain Networks and their Discriminability across Disorders. Neuroinformatics. 2019;18(1):87-107. doi:10.1007/s12021-019-09422-1. PMID:31187352. PMCID:PMC6904532.