DisConICA

DisConICA assesses reproducibility and discriminability of functional brain networks derived from resting-state functional magnetic resonance imaging (rs-fMRI) to identify candidate biomarkers for brain disorders.


Key Features:

  • Discover-Confirm Methodology: Employs a discover-confirm approach beginning with gRAICAR (generalized Ranking and Averaging Independent Component Analysis by Reproducibility) to identify reproducible independent components representing brain networks.
  • Reproducibility Assessment: Identifies functional networks that are highly reproducible within separate clinical or control groups but not reproducible when groups are combined, as potential individual-level discriminators.
  • Unsupervised Clustering Analysis: Applies unsupervised clustering to evaluate and validate the discriminative ability of discovered components between clinical and control groups.
  • Integration with SPM, FSL and DICOM support: Interfaces with SPM (Statistical Parametric Mapping) and FSL (FMRIB Software Library) and processes raw DICOM images as part of neuroimaging analysis workflows.

Scientific Applications:

  • Biomarker discovery from rs-fMRI: Facilitates identification of functional brain networks that may serve as robust indicators for distinguishing brain disorders from rs-fMRI data.
  • Clinical differentiation of PTSD and PCS: Demonstrated on rs-fMRI data from US Army soldiers with PTSD, comorbid PCS + PTSD, and matched healthy combat controls to evaluate real-world discriminability.

Methodology:

Hypothesizes that networks reproducible within separate groups but not when merged are effective discriminators; uses gRAICAR in the discover phase for reproducibility assessment and unsupervised clustering in the confirm phase to validate discriminative power.

Topics

Details

License:
Unlicense
Maturity:
Mature
Cost:
Free of charge
Tool Type:
desktop application
Operating Systems:
Linux, Mac
Programming Languages:
MATLAB
Added:
6/20/2019
Last Updated:
11/24/2024

Operations

Publications

Syed MA, Yang Z, Rangaprakash D, Hu X, Dretsch MN, Katz JS, Denney TS, Deshpande G. DisConICA: a Software Package for Assessing Reproducibility of Brain Networks and their Discriminability across Disorders. Neuroinformatics. 2019;18(1):87-107. doi:10.1007/s12021-019-09422-1. PMID:31187352. PMCID:PMC6904532.

PMID: 31187352
PMCID: PMC6904532
Funding: - National Science Foundation: 0966278 - U.S. Army Medical Research and Materials Command: 00007218 - National Natural Science Foundation of China: 81270023 - Foundation of Beijing Key Laboratory of Mental Disorders: 2014JSJB03 - Beijing Nova Program for Science and Technology: XXJH2015B079 - The Outstanding Young Investigator Award of Institute of Psychology, Chinese Academy of Sciences: Y4CX062008 - National Institutes of Health: DA033393, R01EY025978

Documentation

Links