Divergence
Divergence is an R package designed to analyze high-dimensional omics data, offering a unique approach to transform each entry in a profile into a digitized (binary or ternary) code based on its deviation from a specified baseline population. This innovative framework distinguishes itself from existing methods by allowing the digitization of continuous omics data at the univariate or multivariate level.
Topic
Metagenomics;RNA-Seq;Microarray experiment
Detail
Operation: Essential dynamics;Expression analysis
Software interface: Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 1.18.0
Credit: NIH-NCI, the Department of Defense (DoD) office of the Congressionally Directed Medical Research Programs (CDMRP).
Input: -
Output: -
Contact: Wikum Dinalankara wdd4001@med.cornell.edu, Luigi Marchionni marchion@jhu.edu
Collection: -
Maturity: Stable
Publications
- An R package for divergence analysis of omics data
- Dinalankara W, Ke Q, Geman D, Marchionni L. An R package for divergence analysis of omics data. PLoS One. 2021 Apr 5;16(4):e0249002. doi: 10.1371/journal.pone.0249002. PMID: 33819273; PMCID: PMC8021195.
- https://doi.org/10.1371/journal.pone.0249002
- PMID: 33819273
- PMC: PMC8021195
Download and documentation
Source: http://www.bioconductor.org/packages/release/bioc/src/contrib/divergence_1.18.0.tar.gz
Documentation: http://www.bioconductor.org/packages/release/bioc/manuals/divergence/man/divergence.pdf
Home page: http://www.bioconductor.org/packages/release/bioc/html/divergence.html
Links: http://www.bioconductor.org/packages/release/bioc/vignettes/divergence/inst/doc/divergence.html
Links: http://www.bioconductor.org/packages/release/bioc/vignettes/divergence/inst/doc/divergence.R
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