Fetal XCMR
Fetal XCMR simulates maternal and fetal cardiovascular magnetic resonance (CMR) data by modifying extended Cardiac-Torso models to generate anatomically and physiologically realistic phantom datasets for development and validation of fetal CMR acquisition and reconstruction methods.
Key Features:
- Anatomical modeling: Modifies extended Cardiac-Torso models to create detailed maternal and fetal anatomical structures.
- Motion simulation: Integrates maternal respiratory and fetal motion patterns into the combined anatomy to reproduce dynamic conditions.
- CMR contrast mapping: Maps anatomical structures to appropriate CMR contrasts to emulate tissue signals and contrast fidelity.
- Data conversion: Converts simulated anatomies and contrasts into CMR data for reconstruction and analysis.
- Reconstruction support: Supports static, real-time, and CINE (cardiac cine) reconstruction methods for simulated datasets.
- Motion estimation techniques: Implements translational motion estimation and fetal heart rate analysis for motion handling.
- Multiplanar simulation: Applies simulations and motion estimation across transverse, sagittal, coronal, and short-axis planes.
- Validation metrics: Enables assessments of image quality, anatomical accuracy, tissue signals, and contrast fidelity via comparisons with in utero CMR.
- Scan parameter realism: Incorporates typical scan parameters from pregnant women and matches motion and noise levels to realistic conditions.
Scientific Applications:
- Acquisition and reconstruction validation: Allows development and validation of fetal CMR acquisition and reconstruction techniques using realistic simulated data.
- Algorithm benchmarking: Provides ground-truth phantoms for quantitative benchmarking of reconstruction and motion-correction algorithms.
- Motion estimation evaluation: Enables evaluation of translational motion and fetal heart rate analysis methods across multiple imaging planes.
- Contrast and signal assessment: Facilitates comparison of simulated and in utero tissue signals and contrast fidelity for sequence and protocol assessment.
- Dynamic visualization: Supports visualization and comparison of maternal respiratory motion and fetal cardiac dynamics in simulated and experimental datasets.
Methodology:
Modify extended Cardiac-Torso models to create maternal and fetal anatomical structures, integrate them with simulated motion patterns, map structures to CMR contrasts, convert to CMR data, incorporate scan parameters and matched motion/noise levels from pregnant women, apply motion estimation (translational and fetal heart rate analysis) and perform static, real-time, and CINE reconstructions across transverse, sagittal, coronal, and short-axis planes, then compare phantom outputs to in utero CMR assessing image quality, anatomical accuracy, tissue signals, and contrast fidelity.
Topics
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- MATLAB
- Added:
- 8/9/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Roy CW, Marini D, Segars WP, Seed M, Macgowan CK. Fetal XCMR: a numerical phantom for fetal cardiovascular magnetic resonance imaging. Journal of Cardiovascular Magnetic Resonance. 2019;21(1):29. doi:10.1186/s12968-019-0539-2. PMID:31118056. PMCID:PMC6532268.
Documentation
Downloads
- Source codehttps://github.com/cwroy/Fetal-XCMR/releases