FoPA

Formal model checking based pathway analysis (FoPA) - tool for identification of perturbed signaling pathways in clinical conditions using formal methods.

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Topics

Molecular interactions, pathways and networks Endocrinology and metabolism Microarray experiment

Details

Maturity:: Mature
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Linux, Windows, Mac
Programming Languages:: Python
Added:: 6/21/2019
Last Updated:: 6/16/2020

Operations

Enrichment analysis
Expression profile pathway mapping
Network simulation

Documentation

General

https://github.com/fmansoori/FoPA/blob/master/ReadMe.txt

Links

Issue tracker

https://github.com/fmansoori/FoPA/issues

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