GUcal
GUcal calculates glucose unit (GU) values from capillary electrophoresis (CE) electropherograms to support structural elucidation and tentative assignment of N-glycans.
Key Features:
- Automated GU Value Calculation: Calculates glucose unit (GU) values automatically from CE electropherograms to enable high-throughput GU determination.
- Tentative Structure Suggestion: Suggests potential N-glycan structures by querying an internal database with calculated GU values.
- Expanded Database Integration: Integrates publicly available CE data from the GlycoStore collection and in-house measured GU values into its internal database to broaden reference coverage.
- Internal/Bracketing Standard Approach: Employs a bracketing standard calibration method to ensure precise GU calibration and reliable quantification of glycan components in complex mixtures.
Scientific Applications:
- High-throughput N-glycan profiling: Supports large-scale profiling of N-glycans by providing automated GU determination from CE data.
- First-line structural elucidation: Provides rapid, first-line tentative assignment of N-glycan structures to guide subsequent validation with complementary techniques.
- Calibration and quantitative analysis: Enables calibration and quantitative comparison of glycan mixtures using bracketing standards and reference GU values.
Methodology:
Integration of CE data into an internal database, calibration using bracketing standards, and automated calculation of GU values with database-driven tentative structure suggestion.
Topics
Details
- Tool Type:
- command-line tool
- Added:
- 1/14/2020
- Last Updated:
- 12/7/2020
Operations
Publications
Jarvas G, Szigeti M, Campbell MP, Guttman A. Expanding the capillary electrophoresis-based glucose unit database of the GUcal app. Glycobiology. 2019;30(6):362-364. doi:10.1093/glycob/cwz102. PMID:31829415.
PMID: 31829415
Funding: - National Research Development and Innovation Office: 2018-2.1.17-TÉT-KR-2018-00010, NN127062
- Institute for Glycomics: BIONANO_GINOP-2.3.2-15-2016-00017