Genomicus-fungi

Genomicus-fungi provides synteny-based comparative genomics visualization and analysis to study the evolution of gene organization across fungal species.

Key Features:

• Multi-Dimensional Navigation: Provides linear chromosome-axis views, cross-species transverse comparisons, and chronological evolutionary time perspectives.
• Unlimited Genome Comparison: Supports comparison of an unlimited number of genomes within a broad phylogenetic context.
• Reconstructed Ancestral Gene Organization: Includes reconstructed ancestral gene organizations to interpret evolutionary events and genome-structure changes.
• Synteny-Based Visualization: Implements synteny analysis to visualize and compare genomic regions across species.

Scientific Applications:

• Evolution of Gene Organization: Investigating the evolution of gene organization within fungal species.
• Phylogenetic Relationships: Inferring phylogenetic relationships across fungi using conserved synteny patterns.
• Gene Conservation and Divergence: Identifying conserved genetic elements and divergence patterns across multiple species.
• Ancestral Genome Interpretation: Reconstructing and interpreting ancestral genome structures to study historical genome changes.

Methodology:

Performs synteny analysis to visualize and compare genomic regions and integrates reconstructed ancestral gene organizations for evolutionary interpretation.