HBPred2.0
HBPred2.0 predicts soluble carrier hormone-binding proteins (HBPs) in humans and animals to facilitate identification of proteins involved in growth regulation and other biological processes.
Key Features:
- Target: Predicts soluble carrier hormone-binding proteins (HBPs) in human and animal proteomes.
- Machine Learning-Based Methodology: Employs a machine learning approach to distinguish HBPs from non-HBPs.
- Feature Encoding: Uses an optimal tripeptide composition encoding derived from a binomial distribution method.
- Performance: Demonstrated 97.15% overall accuracy in a 5-fold cross-validation assessment.
Scientific Applications:
- In silico identification: Enables computational identification of candidate HBPs to prioritize targets for experimental validation.
- Functional studies: Supports investigation of hormone–protein interactions and molecular mechanisms underlying growth regulation.
- Comparative proteomics: Can be applied to human and animal proteomes to compare HBP repertoires across species.
Methodology:
Machine learning approach using optimal tripeptide composition encoding derived from a binomial distribution method and evaluated by 5-fold cross-validation (97.15% overall accuracy).
Topics
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- api, web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 8/9/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Tan J, Li S, Zhang Z, Chen C, Chen W, Tang H, Lin H. Identification of hormone binding proteins based on machine learning methods. Mathematical Biosciences and Engineering. 2019;16(4):2466-2480. doi:10.3934/mbe.2019123. PMID:31137222.
DOI: 10.3934/MBE.2019123
PMID: 31137222
Documentation
Downloads
- Biological datahttp://lin-group.cn/server/HBPred2.0/download.html