Haloarchaeal Genomes

Haloarchaeal Genomes provides an integrated repository of finished and publicly available haloarchaeal genomes, including gene, protein, RNA and insertion element sequences with annotations to support comparative genomics and functional analyses of haloarchaea.

Key Features:

• Integrated Data Repository: Consolidates finished and publicly available haloarchaeal genomes with gene, protein, RNA sequences and detailed annotation data.
• Insertion Element Sequences: Includes insertion element sequences to characterize genomic architecture.
• Genome Map Generation: Provides computational tools for genome map generation.
• Sequence Extraction and Editing: Offers tools for sequence extraction and sequence editing.
• Dynamic External Linking: Dynamically links entries to NCBI PubMed, BLAST, COG and KOG protein clusters, KEGG pathways, and GTOP structures.
• Curation and Updates: Maintains curated content with regular updates.

Scientific Applications:

• Comparative Genomics: Enables comparative analyses across haloarchaeal genomes using consolidated sequences and annotations.
• Functional Genomics: Supports analysis of gene and genome structure, organization, and function in haloarchaea.
• Systems Biology: Facilitates systems biology studies of haloarchaea by integrating genomic, transcriptomic, and proteomic data.

Methodology:

Consolidation of finished and public genomes with gene/protein/RNA annotations and insertion element sequences; dynamic linking to NCBI PubMed, BLAST, COG, KOG, KEGG, and GTOP; tools for genome map generation, sequence extraction, and sequence editing; manual curation and regular updates.