I3
I3 integrates multiple layers of genetic information to interpret relationships between gene expression and protein phenotypes, with emphasis on brain tissues.
Key Features:
- Self-Organising Principle: Implements a self-organising framework that adaptively processes complex genetic datasets.
- Integration of Diverse Data Sources: Integrates human population genetics and the evolutionary history of genes with other genetic data sources.
- Focus on Gene Expression and Protein Phenotypes: Targets interpretation of the genetics of gene expression in brain tissues and identification of genetic regulators that influence protein phenotypes.
- Identification of Loss-of-Function Intolerant Genes: Detects loss-of-function intolerant genes and assesses their depletion in tissue-sharing genetics of gene expression in brains and their broad effects on protein phenotypes when highly expressed.
Scientific Applications:
- Genetic Data Interpretation: Provides a structured approach to decipher relationships between genes, gene expression, and resultant phenotypic outcomes.
- Research into Brain Genetics: Supports studies of brain genetics by interpreting gene expression patterns relevant to brain function and neurological conditions.
- Evolutionary and Population Genetics Studies: Enables incorporation of evolutionary history and population genetic data to study the genetic basis of human diversity and gene evolution.
Methodology:
Integrates multiple layers of genetic information using self-organising algorithms that adaptively interpret complex datasets.
Topics
Details
- Tool Type:
- command-line tool
- Added:
- 1/14/2020
- Last Updated:
- 11/24/2024
Operations
Publications
Tan Y, Jiang L, Wang K, Fang H. <i>I3</i>: A Self-Organising Learning Workflow for Intuitive Integrative Interpretation of Complex Genetic Data. Genomics, Proteomics & Bioinformatics. 2019;17(5):503-510. doi:10.1016/j.gpb.2018.10.006. PMID:31765831. PMCID:PMC7056857.
PMID: 31765831
PMCID: PMC7056857
Funding: - National Natural Science Foundation of China: 31301041, 31301041 awarded to HF, 81530003, 81770153, 81770153 awarded to KW