ImageDataExtractor
ImageDataExtractor automatically extracts microscopy images from scientific documents and performs quantitative particle size and shape analysis.
Key Features:
- Automated Image Extraction: Identifies and retrieves microscopy images from publications using optical character recognition (OCR) and super-resolution convolutional neural networks.
- Scale Bar Decoding: Deciphers scale bar information via OCR to enable accurate physical measurement calibration.
- Particle Detection and Quantification: Applies thresholding, segmentation, polygon fitting, and edge correction algorithms to detect particles and compute size and shape descriptors.
- High-Throughput Processing: Processes large image collections with precision and recall exceeding 80% for most extraction and analysis steps.
Scientific Applications:
- Data-Driven Materials Characterization: Generates quantitative particle morphology datasets from microscopy images to support structure–property analysis and materials discovery.
Methodology:
ImageDataExtractor integrates OCR and super-resolution convolutional neural networks for image and scale bar extraction, followed by calibrated image processing workflows including thresholding, segmentation, polygon fitting, and edge correction to quantify particle morphology.
Topics
Details
- License:
- MIT
- Tool Type:
- desktop application
- Added:
- 1/14/2020
- Last Updated:
- 12/14/2020
Operations
Publications
Mukaddem KT, Beard EJ, Yildirim B, Cole JM. ImageDataExtractor: A Tool To Extract and Quantify Data from Microscopy Images. Journal of Chemical Information and Modeling. 2019;60(5):2492-2509. doi:10.1021/acs.jcim.9b00734. PMID:31714792.