ImageDataExtractor

ImageDataExtractor automatically extracts microscopy images from scientific documents and performs quantitative particle size and shape analysis.


Key Features:

  • Automated Image Extraction: Identifies and retrieves microscopy images from publications using optical character recognition (OCR) and super-resolution convolutional neural networks.
  • Scale Bar Decoding: Deciphers scale bar information via OCR to enable accurate physical measurement calibration.
  • Particle Detection and Quantification: Applies thresholding, segmentation, polygon fitting, and edge correction algorithms to detect particles and compute size and shape descriptors.
  • High-Throughput Processing: Processes large image collections with precision and recall exceeding 80% for most extraction and analysis steps.

Scientific Applications:

  • Data-Driven Materials Characterization: Generates quantitative particle morphology datasets from microscopy images to support structure–property analysis and materials discovery.

Methodology:

ImageDataExtractor integrates OCR and super-resolution convolutional neural networks for image and scale bar extraction, followed by calibrated image processing workflows including thresholding, segmentation, polygon fitting, and edge correction to quantify particle morphology.

Topics

Details

License:
MIT
Tool Type:
desktop application
Added:
1/14/2020
Last Updated:
12/14/2020

Operations

Publications

Mukaddem KT, Beard EJ, Yildirim B, Cole JM. ImageDataExtractor: A Tool To Extract and Quantify Data from Microscopy Images. Journal of Chemical Information and Modeling. 2019;60(5):2492-2509. doi:10.1021/acs.jcim.9b00734. PMID:31714792.

PMID: 31714792
Funding: - Royal Academy of Engineering: RCSRF1819\7\10